Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 MIR3960-201ENST00000583311 91 ntBASIC16.91■□□□□ 0.3
UPK3BQ9BT76 LINC01003-201ENST00000564834 1764 ntBASIC16.91■□□□□ 0.3
UPK3BQ9BT76 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
UPK3BQ9BT76 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK3BQ9BT76 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
UPK3BQ9BT76 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK3BQ9BT76 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK3BQ9BT76 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
UPK3BQ9BT76 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 U85056.1-201ENST00000616429 682 ntBASIC16.9■□□□□ 0.3
UPK3BQ9BT76 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
UPK3BQ9BT76 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK3BQ9BT76 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK3BQ9BT76 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK3BQ9BT76 RP9P-202ENST00000450133 1212 ntBASIC16.89■□□□□ 0.29
UPK3BQ9BT76 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC16.89■□□□□ 0.29
UPK3BQ9BT76 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
UPK3BQ9BT76 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC16.89■□□□□ 0.29
UPK3BQ9BT76 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK3BQ9BT76 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 HES4-204ENST00000484667 667 ntTSL 3 BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 AC012354.3-201ENST00000623734 483 ntBASIC16.88■□□□□ 0.29
UPK3BQ9BT76 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK3BQ9BT76 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
UPK3BQ9BT76 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
UPK3BQ9BT76 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC16.87■□□□□ 0.29
UPK3BQ9BT76 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
UPK3BQ9BT76 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
UPK3BQ9BT76 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
UPK3BQ9BT76 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
UPK3BQ9BT76 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
UPK3BQ9BT76 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC16.86■□□□□ 0.29
UPK3BQ9BT76 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC16.85■□□□□ 0.29
UPK3BQ9BT76 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
UPK3BQ9BT76 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
UPK3BQ9BT76 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
UPK3BQ9BT76 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC16.85■□□□□ 0.29
UPK3BQ9BT76 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC16.85■□□□□ 0.29
UPK3BQ9BT76 BX255925.1-201ENST00000566954 1854 ntBASIC16.84■□□□□ 0.29
UPK3BQ9BT76 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 AL359504.2-201ENST00000605506 1601 ntBASIC16.84■□□□□ 0.29
UPK3BQ9BT76 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
UPK3BQ9BT76 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 AC009831.1-201ENST00000580420 1582 ntBASIC16.83■□□□□ 0.28
UPK3BQ9BT76 AC026202.3-201ENST00000600805 1127 ntBASIC16.83■□□□□ 0.28
UPK3BQ9BT76 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 AC133552.2-201ENST00000619106 1032 ntBASIC16.83■□□□□ 0.28
UPK3BQ9BT76 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
UPK3BQ9BT76 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 AC142086.6-201ENST00000621154 1765 ntBASIC16.82■□□□□ 0.28
UPK3BQ9BT76 KRT18P60-201ENST00000312876 1297 ntBASIC16.82■□□□□ 0.28
UPK3BQ9BT76 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 AC093536.1-201ENST00000569153 554 ntBASIC16.82■□□□□ 0.28
UPK3BQ9BT76 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
UPK3BQ9BT76 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
UPK3BQ9BT76 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
UPK3BQ9BT76 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
UPK3BQ9BT76 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms