Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
VRK1Q99986 BX255925.1-201ENST00000566954 1854 ntBASIC21.41■■□□□ 1.02
VRK1Q99986 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VRK1Q99986 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.41■■□□□ 1.02
VRK1Q99986 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
VRK1Q99986 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.41■■□□□ 1.02
VRK1Q99986 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
VRK1Q99986 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VRK1Q99986 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.4■■□□□ 1.02
VRK1Q99986 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
VRK1Q99986 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
VRK1Q99986 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
VRK1Q99986 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VRK1Q99986 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VRK1Q99986 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.39■■□□□ 1.01
VRK1Q99986 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.39■■□□□ 1.01
VRK1Q99986 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK1Q99986 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.38■■□□□ 1.01
VRK1Q99986 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK1Q99986 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VRK1Q99986 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.37■■□□□ 1.01
VRK1Q99986 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK1Q99986 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK1Q99986 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VRK1Q99986 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK1Q99986 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.36■■□□□ 1.01
VRK1Q99986 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VRK1Q99986 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK1Q99986 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VRK1Q99986 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.36■■□□□ 1.01
VRK1Q99986 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.36■■□□□ 1.01
VRK1Q99986 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.36■■□□□ 1.01
VRK1Q99986 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.36■■□□□ 1.01
VRK1Q99986 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.35■■□□□ 1.01
VRK1Q99986 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
VRK1Q99986 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK1Q99986 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK1Q99986 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VRK1Q99986 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK1Q99986 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.34■■□□□ 1.01
VRK1Q99986 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK1Q99986 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VRK1Q99986 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.33■■□□□ 1.01
VRK1Q99986 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
VRK1Q99986 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.33■■□□□ 1
VRK1Q99986 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.33■■□□□ 1
VRK1Q99986 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK1Q99986 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.32■■□□□ 1
VRK1Q99986 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.32■■□□□ 1
VRK1Q99986 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.32■■□□□ 1
VRK1Q99986 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK1Q99986 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.32■■□□□ 1
VRK1Q99986 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK1Q99986 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.32■■□□□ 1
VRK1Q99986 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.32■■□□□ 1
VRK1Q99986 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.31■■□□□ 1
VRK1Q99986 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VRK1Q99986 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VRK1Q99986 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.3■■□□□ 1
VRK1Q99986 AC092296.2-201ENST00000589470 999 ntBASIC21.3■■□□□ 1
VRK1Q99986 NTF6A-201ENST00000591175 560 ntBASIC21.3■■□□□ 1
VRK1Q99986 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 AP002414.2-202ENST00000590929 1450 ntBASIC21.3■■□□□ 1
VRK1Q99986 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
VRK1Q99986 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK1Q99986 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.29■■□□□ 1
VRK1Q99986 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VRK1Q99986 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.29■■□□□ 1
VRK1Q99986 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.29■■□□□ 1
VRK1Q99986 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.28■■□□□ 1
VRK1Q99986 AL359258.2-201ENST00000564063 1566 ntBASIC21.28■■□□□ 1
VRK1Q99986 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.28■■□□□ 1
VRK1Q99986 ECEL1P2-201ENST00000461596 1295 ntBASIC21.28■■□□□ 1
VRK1Q99986 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
VRK1Q99986 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
VRK1Q99986 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms