Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
RETREG3Q86VR2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
RETREG3Q86VR2 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RETREG3Q86VR2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
RETREG3Q86VR2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RETREG3Q86VR2 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
RETREG3Q86VR2 AC087741.3-201ENST00000624270 1347 ntBASIC23.33■■□□□ 1.32
RETREG3Q86VR2 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RETREG3Q86VR2 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
RETREG3Q86VR2 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RETREG3Q86VR2 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RETREG3Q86VR2 AP006261.1-201ENST00000584783 668 ntBASIC23.28■■□□□ 1.32
RETREG3Q86VR2 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.28■■□□□ 1.32
RETREG3Q86VR2 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 AC142381.3-201ENST00000568208 1670 ntBASIC23.25■■□□□ 1.31
RETREG3Q86VR2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 AC022211.4-201ENST00000625094 2161 ntBASIC23.2■■□□□ 1.3
RETREG3Q86VR2 AC138932.3-201ENST00000567634 1902 ntBASIC23.2■■□□□ 1.3
RETREG3Q86VR2 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 AC021231.2-201ENST00000594613 730 ntBASIC23.19■■□□□ 1.3
RETREG3Q86VR2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms