Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RP9P-202ENST00000450133 1212 ntBASIC30.1■■■□□ 2.41
USP48Q86UV5 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.1■■■□□ 2.41
USP48Q86UV5 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
USP48Q86UV5 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP48Q86UV5 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
USP48Q86UV5 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP48Q86UV5 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP48Q86UV5 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.09■■■□□ 2.41
USP48Q86UV5 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.09■■■□□ 2.41
USP48Q86UV5 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
USP48Q86UV5 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
USP48Q86UV5 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
USP48Q86UV5 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.07■■■□□ 2.4
USP48Q86UV5 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
USP48Q86UV5 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.06■■■□□ 2.4
USP48Q86UV5 SPCS2P3-201ENST00000500401 656 ntBASIC30.06■■■□□ 2.4
USP48Q86UV5 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.06■■■□□ 2.4
USP48Q86UV5 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
USP48Q86UV5 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
USP48Q86UV5 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
USP48Q86UV5 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.05■■■□□ 2.4
USP48Q86UV5 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
USP48Q86UV5 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC30.05■■■□□ 2.4
USP48Q86UV5 THA1P-201ENST00000590384 1145 ntBASIC30.05■■■□□ 2.4
USP48Q86UV5 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
USP48Q86UV5 AC074183.2-201ENST00000623112 922 ntBASIC30.05■■■□□ 2.4
USP48Q86UV5 AL359258.2-201ENST00000564063 1566 ntBASIC30.05■■■□□ 2.4
USP48Q86UV5 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
USP48Q86UV5 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
USP48Q86UV5 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP48Q86UV5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP48Q86UV5 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.04■■■□□ 2.4
USP48Q86UV5 AC103834.1-201ENST00000520383 144 ntBASIC30.04■■■□□ 2.4
USP48Q86UV5 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.04■■■□□ 2.4
USP48Q86UV5 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USP48Q86UV5 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP48Q86UV5 AL121749.1-202ENST00000609313 2153 ntBASIC30.03■■■□□ 2.4
USP48Q86UV5 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.03■■■□□ 2.4
USP48Q86UV5 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC30.02■■■□□ 2.4
USP48Q86UV5 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
USP48Q86UV5 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.02■■■□□ 2.4
USP48Q86UV5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
USP48Q86UV5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP48Q86UV5 AC025884.2-201ENST00000553429 711 ntBASIC30.01■■■□□ 2.39
USP48Q86UV5 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.01■■■□□ 2.39
USP48Q86UV5 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USP48Q86UV5 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
USP48Q86UV5 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30■■■□□ 2.39
USP48Q86UV5 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
USP48Q86UV5 YBX1P4-201ENST00000392794 808 ntBASIC29.99■■■□□ 2.39
USP48Q86UV5 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP48Q86UV5 AC139795.1-202ENST00000500444 432 ntBASIC29.99■■■□□ 2.39
USP48Q86UV5 AC093536.1-201ENST00000569153 554 ntBASIC29.99■■■□□ 2.39
USP48Q86UV5 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP48Q86UV5 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.98■■■□□ 2.39
USP48Q86UV5 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC29.98■■■□□ 2.39
USP48Q86UV5 RAP2CP1-202ENST00000605179 643 ntBASIC29.98■■■□□ 2.39
USP48Q86UV5 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP48Q86UV5 PVT1_1.1-201ENST00000615125 194 ntBASIC29.98■■■□□ 2.39
USP48Q86UV5 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC29.98■■■□□ 2.39
USP48Q86UV5 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP48Q86UV5 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP48Q86UV5 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.98■■■□□ 2.39
USP48Q86UV5 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC29.98■■■□□ 2.39
USP48Q86UV5 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USP48Q86UV5 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP48Q86UV5 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USP48Q86UV5 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
USP48Q86UV5 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP48Q86UV5 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
USP48Q86UV5 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
USP48Q86UV5 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC29.96■■■□□ 2.39
USP48Q86UV5 GUSBP5-201ENST00000418136 578 ntBASIC29.96■■■□□ 2.39
USP48Q86UV5 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC29.96■■■□□ 2.39
USP48Q86UV5 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
USP48Q86UV5 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
USP48Q86UV5 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
USP48Q86UV5 OR2A1-AS1-204ENST00000470435 602 ntBASIC29.95■■■□□ 2.39
USP48Q86UV5 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
USP48Q86UV5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
USP48Q86UV5 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC29.94■■■□□ 2.38
USP48Q86UV5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC29.94■■■□□ 2.38
USP48Q86UV5 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
USP48Q86UV5 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC29.94■■■□□ 2.38
USP48Q86UV5 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
USP48Q86UV5 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.93■■■□□ 2.38
USP48Q86UV5 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.93■■■□□ 2.38
USP48Q86UV5 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
USP48Q86UV5 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
USP48Q86UV5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
USP48Q86UV5 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USP48Q86UV5 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USP48Q86UV5 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USP48Q86UV5 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.92■■■□□ 2.38
USP48Q86UV5 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
USP48Q86UV5 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
USP48Q86UV5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
USP48Q86UV5 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.91■■■□□ 2.38
USP48Q86UV5 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC29.91■■■□□ 2.38
USP48Q86UV5 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC29.91■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms