Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX1P47902 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CDX1P47902 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CDX1P47902 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CDX1P47902 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX1P47902 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX1P47902 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX1P47902 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDX1P47902 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX1P47902 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDX1P47902 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.73■□□□□ 0.75
CDX1P47902 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX1P47902 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX1P47902 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CDX1P47902 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.72■□□□□ 0.75
CDX1P47902 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.72■□□□□ 0.75
CDX1P47902 AL139393.2-201ENST00000608721 2025 ntBASIC19.72■□□□□ 0.75
CDX1P47902 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX1P47902 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDX1P47902 LINC00543-201ENST00000567234 1845 ntBASIC19.72■□□□□ 0.75
CDX1P47902 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX1P47902 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CDX1P47902 PEX7-203ENST00000541292 945 ntTSL 5 BASIC19.71■□□□□ 0.75
CDX1P47902 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.71■□□□□ 0.75
CDX1P47902 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
CDX1P47902 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX1P47902 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.71■□□□□ 0.75
CDX1P47902 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDX1P47902 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX1P47902 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX1P47902 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX1P47902 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.7■□□□□ 0.74
CDX1P47902 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDX1P47902 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.7■□□□□ 0.74
CDX1P47902 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CDX1P47902 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CDX1P47902 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.7■□□□□ 0.74
CDX1P47902 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.7■□□□□ 0.74
CDX1P47902 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.69■□□□□ 0.74
CDX1P47902 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CDX1P47902 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.69■□□□□ 0.74
CDX1P47902 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CDX1P47902 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.69■□□□□ 0.74
CDX1P47902 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.69■□□□□ 0.74
CDX1P47902 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.69■□□□□ 0.74
CDX1P47902 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.68■□□□□ 0.74
CDX1P47902 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.68■□□□□ 0.74
CDX1P47902 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.68■□□□□ 0.74
CDX1P47902 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CDX1P47902 AC133561.1-201ENST00000568600 2415 ntBASIC19.67■□□□□ 0.74
CDX1P47902 AC100797.4-201ENST00000631653 1827 ntBASIC19.67■□□□□ 0.74
CDX1P47902 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX1P47902 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX1P47902 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX1P47902 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CDX1P47902 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX1P47902 AC148477.6-201ENST00000623746 465 ntBASIC19.67■□□□□ 0.74
CDX1P47902 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX1P47902 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CDX1P47902 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
CDX1P47902 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CDX1P47902 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX1P47902 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX1P47902 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDX1P47902 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX1P47902 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CDX1P47902 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX1P47902 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.66■□□□□ 0.74
CDX1P47902 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX1P47902 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX1P47902 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CDX1P47902 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX1P47902 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDX1P47902 HSD17B1P1-201ENST00000590052 955 ntBASIC19.65■□□□□ 0.74
CDX1P47902 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CDX1P47902 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX1P47902 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
CDX1P47902 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.64■□□□□ 0.74
CDX1P47902 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CDX1P47902 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.64■□□□□ 0.74
CDX1P47902 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDX1P47902 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX1P47902 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CDX1P47902 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX1P47902 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX1P47902 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX1P47902 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX1P47902 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX1P47902 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDX1P47902 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDX1P47902 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX1P47902 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms