Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 AC092647.4-201ENST00000457211 535 ntBASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHGA11Q9Y5H2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AC092597.1-201ENST00000487352 616 ntBASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 ZNF444P1-201ENST00000559497 298 ntBASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AC116407.2-201ENST00000613639 860 ntBASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCDHGA11Q9Y5H2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDHGA11Q9Y5H2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms