Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 KRT18P2-201ENST00000447938 1258 ntBASIC20.92■□□□□ 0.94
DDX4Q9NQI0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 AC010327.4-202ENST00000591484 748 ntBASIC20.92■□□□□ 0.94
DDX4Q9NQI0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.92■□□□□ 0.94
DDX4Q9NQI0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 RPSAP43-201ENST00000402237 625 ntBASIC20.91■□□□□ 0.94
DDX4Q9NQI0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 STK25P1-201ENST00000585406 838 ntBASIC20.91■□□□□ 0.94
DDX4Q9NQI0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DDX4Q9NQI0 AC009113.1-201ENST00000570267 2443 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AC003669.1-201ENST00000334569 611 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AC023274.1-201ENST00000418278 595 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 UPF3AP3-201ENST00000420996 769 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 GPX1P2-201ENST00000429271 606 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 DDX43P3-201ENST00000441064 443 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AC092183.1-201ENST00000469884 875 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 AC064836.3-201ENST00000607928 673 ntBASIC20.9■□□□□ 0.94
DDX4Q9NQI0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
DDX4Q9NQI0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
DDX4Q9NQI0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.89■□□□□ 0.94
DDX4Q9NQI0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
DDX4Q9NQI0 BX276092.7-203ENST00000637198 1536 ntBASIC20.89■□□□□ 0.94
DDX4Q9NQI0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
DDX4Q9NQI0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
DDX4Q9NQI0 AC090164.3-201ENST00000610780 2143 ntBASIC20.89■□□□□ 0.94
DDX4Q9NQI0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 RNA5SP416-201ENST00000516838 111 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms