Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 AC112698.1-201ENST00000510299 916 ntBASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRRC40Q9H9A6 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AC133963.1-201ENST00000504166 1679 ntBASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AC005332.3-201ENST00000589904 676 ntBASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 FZD10-202ENST00000539839 3282 ntBASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRRC40Q9H9A6 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 TMPOP1-202ENST00000424642 1267 ntBASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 DUX4L26-201ENST00000489078 1255 ntBASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 AL390719.2-201ENST00000606993 987 ntBASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 AC083849.1-201ENST00000615227 514 ntBASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.09■□□□□ 0.49
LRRC40Q9H9A6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LRRC40Q9H9A6 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LRRC40Q9H9A6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 271.3 ms