Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
MMP28Q9H239 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC15.78■□□□□ 0.12
MMP28Q9H239 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
MMP28Q9H239 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.78■□□□□ 0.12
MMP28Q9H239 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.78■□□□□ 0.12
MMP28Q9H239 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.78■□□□□ 0.12
MMP28Q9H239 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.78■□□□□ 0.12
MMP28Q9H239 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.78■□□□□ 0.12
MMP28Q9H239 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
MMP28Q9H239 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.78■□□□□ 0.12
MMP28Q9H239 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
MMP28Q9H239 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.77■□□□□ 0.12
MMP28Q9H239 AC112777.1-201ENST00000540175 1423 ntBASIC15.77■□□□□ 0.12
MMP28Q9H239 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.77■□□□□ 0.12
MMP28Q9H239 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.77■□□□□ 0.12
MMP28Q9H239 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.77■□□□□ 0.12
MMP28Q9H239 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.77■□□□□ 0.12
MMP28Q9H239 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.77■□□□□ 0.12
MMP28Q9H239 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.77■□□□□ 0.12
MMP28Q9H239 Z99916.2-201ENST00000604037 246 ntBASIC15.77■□□□□ 0.12
MMP28Q9H239 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.77■□□□□ 0.12
MMP28Q9H239 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MMP28Q9H239 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.77■□□□□ 0.11
MMP28Q9H239 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MMP28Q9H239 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
MMP28Q9H239 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
MMP28Q9H239 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MMP28Q9H239 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MMP28Q9H239 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.77■□□□□ 0.11
MMP28Q9H239 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
MMP28Q9H239 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
MMP28Q9H239 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 HTR7P1-201ENST00000538670 1336 ntBASIC15.76■□□□□ 0.11
MMP28Q9H239 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MMP28Q9H239 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.76■□□□□ 0.11
MMP28Q9H239 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
MMP28Q9H239 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 AL353807.1-201ENST00000427475 662 ntBASIC15.76■□□□□ 0.11
MMP28Q9H239 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.76■□□□□ 0.11
MMP28Q9H239 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.76■□□□□ 0.11
MMP28Q9H239 MIR4497-201ENST00000583208 89 ntBASIC15.76■□□□□ 0.11
MMP28Q9H239 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.76■□□□□ 0.11
MMP28Q9H239 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.76■□□□□ 0.11
MMP28Q9H239 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MMP28Q9H239 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
MMP28Q9H239 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms