Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
COL12A1Q99715 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.44■□□□□ 0.06
COL12A1Q99715 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.44■□□□□ 0.06
COL12A1Q99715 TREML5P-201ENST00000421694 576 ntBASIC15.44■□□□□ 0.06
COL12A1Q99715 KRT18P32-201ENST00000424695 1287 ntBASIC15.44■□□□□ 0.06
COL12A1Q99715 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 AL049757.1-201ENST00000616842 1596 ntBASIC15.44■□□□□ 0.06
COL12A1Q99715 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.44■□□□□ 0.06
COL12A1Q99715 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
COL12A1Q99715 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
COL12A1Q99715 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL12A1Q99715 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.44■□□□□ 0.06
COL12A1Q99715 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.44■□□□□ 0.06
COL12A1Q99715 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.44■□□□□ 0.06
COL12A1Q99715 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.44■□□□□ 0.06
COL12A1Q99715 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.43■□□□□ 0.06
COL12A1Q99715 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.43■□□□□ 0.06
COL12A1Q99715 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
COL12A1Q99715 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
COL12A1Q99715 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.43■□□□□ 0.06
COL12A1Q99715 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.43■□□□□ 0.06
COL12A1Q99715 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.43■□□□□ 0.06
COL12A1Q99715 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
COL12A1Q99715 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.43■□□□□ 0.06
COL12A1Q99715 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.43■□□□□ 0.06
COL12A1Q99715 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
COL12A1Q99715 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL12A1Q99715 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.42■□□□□ 0.06
COL12A1Q99715 AL805961.1-202ENST00000641562 540 ntBASIC15.42■□□□□ 0.06
COL12A1Q99715 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
COL12A1Q99715 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.42■□□□□ 0.06
COL12A1Q99715 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL12A1Q99715 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL12A1Q99715 AC100803.2-201ENST00000562459 1963 ntBASIC15.42■□□□□ 0.06
COL12A1Q99715 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
COL12A1Q99715 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
COL12A1Q99715 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL12A1Q99715 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.42■□□□□ 0.06
COL12A1Q99715 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.42■□□□□ 0.06
COL12A1Q99715 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.42■□□□□ 0.06
COL12A1Q99715 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.42■□□□□ 0.06
COL12A1Q99715 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.42■□□□□ 0.06
COL12A1Q99715 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.42■□□□□ 0.06
COL12A1Q99715 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.42■□□□□ 0.06
COL12A1Q99715 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.42■□□□□ 0.06
COL12A1Q99715 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.42■□□□□ 0.06
COL12A1Q99715 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.42■□□□□ 0.06
COL12A1Q99715 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.41■□□□□ 0.06
COL12A1Q99715 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
COL12A1Q99715 AC093484.2-201ENST00000580996 2166 ntBASIC15.41■□□□□ 0.06
COL12A1Q99715 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.41■□□□□ 0.06
COL12A1Q99715 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.41■□□□□ 0.06
COL12A1Q99715 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL12A1Q99715 AL162274.1-201ENST00000617191 1098 ntBASIC15.41■□□□□ 0.06
COL12A1Q99715 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL12A1Q99715 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms