Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 ELK2BP-201ENST00000415014 1224 ntBASIC18.06■□□□□ 0.48
CHFRQ96EP1 AC103564.2-201ENST00000432853 1299 ntBASIC18.06■□□□□ 0.48
CHFRQ96EP1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 AC108751.1-201ENST00000490852 363 ntBASIC18.06■□□□□ 0.48
CHFRQ96EP1 AC136632.2-201ENST00000512891 861 ntBASIC18.06■□□□□ 0.48
CHFRQ96EP1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 AC004706.3-202ENST00000621574 984 ntBASIC18.06■□□□□ 0.48
CHFRQ96EP1 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHFRQ96EP1 AC006504.4-201ENST00000592118 1568 ntBASIC18.05■□□□□ 0.48
CHFRQ96EP1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHFRQ96EP1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHFRQ96EP1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHFRQ96EP1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHFRQ96EP1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 MIR3687-2-201ENST00000577708 61 ntBASIC18.05■□□□□ 0.48
CHFRQ96EP1 MIR3687-1-201ENST00000614492 61 ntBASIC18.05■□□□□ 0.48
CHFRQ96EP1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 AC134684.3-201ENST00000641758 218 ntBASIC18.05■□□□□ 0.48
CHFRQ96EP1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CHFRQ96EP1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AL096828.2-201ENST00000567259 1965 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC022898.2-201ENST00000616822 1312 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 DNAJB3-201ENST00000446806 729 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC004967.1-201ENST00000453589 447 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC002347.1-201ENST00000569543 541 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AC019129.2-201ENST00000609837 1235 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 AL589182.2-201ENST00000619332 1049 ntBASIC18.04■□□□□ 0.48
CHFRQ96EP1 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHFRQ96EP1 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CHFRQ96EP1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.03■□□□□ 0.48
CHFRQ96EP1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.03■□□□□ 0.48
CHFRQ96EP1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.03■□□□□ 0.48
CHFRQ96EP1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.03■□□□□ 0.48
CHFRQ96EP1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CHFRQ96EP1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHFRQ96EP1 TNXA-203ENST00000507684 2038 ntBASIC18.03■□□□□ 0.48
CHFRQ96EP1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms