Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 ST20-AS1-201ENST00000560255 4223 ntBASIC5.52□□□□□ -1.53
SYNE1Q8NF91 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SYNE1Q8NF91 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 FGFR3P6-201ENST00000457012 610 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PODN-203ENST00000395871 2744 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 UBQLN4P1-201ENST00000461599 1801 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 CD276-201ENST00000318424 2738 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RPL18-209ENST00000550645 463 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RPL18-214ENST00000552588 559 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC006333.2-201ENST00000607957 2099 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PTENP1-202ENST00000532280 3996 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 HNRNPDP1-201ENST00000439535 754 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC117500.6-201ENST00000624871 588 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC008741.2-201ENST00000612792 3115 ntBASIC5.51□□□□□ -1.53
SYNE1Q8NF91 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SYNE1Q8NF91 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms