Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 KRT8P47-201ENST00000604727 1398 ntBASIC21.52■■□□□ 1.04
VPS53Q5VIR6 LINC00896-202ENST00000609602 2128 ntBASIC21.52■■□□□ 1.04
VPS53Q5VIR6 KRT18P55-202ENST00000578578 1546 ntBASIC21.52■■□□□ 1.04
VPS53Q5VIR6 TPSP2-201ENST00000561760 610 ntBASIC21.52■■□□□ 1.04
VPS53Q5VIR6 AP005901.3-202ENST00000581653 237 ntBASIC21.52■■□□□ 1.04
VPS53Q5VIR6 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
VPS53Q5VIR6 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
VPS53Q5VIR6 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 ATP5G2P1-201ENST00000433580 426 ntBASIC21.51■■□□□ 1.03
VPS53Q5VIR6 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 MTCL1P1-201ENST00000446207 792 ntBASIC21.51■■□□□ 1.03
VPS53Q5VIR6 AC090616.6-201ENST00000582640 721 ntBASIC21.51■■□□□ 1.03
VPS53Q5VIR6 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 KRT18P1-202ENST00000452408 1331 ntBASIC21.51■■□□□ 1.03
VPS53Q5VIR6 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS53Q5VIR6 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 GUSBP12-201ENST00000513727 720 ntBASIC21.5■■□□□ 1.03
VPS53Q5VIR6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VPS53Q5VIR6 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 AC006116.8-202ENST00000587620 1550 ntBASIC21.49■■□□□ 1.03
VPS53Q5VIR6 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms