Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 AC005521.1-201ENST00000393351 872 ntBASIC17.19■□□□□ 0.34
HMGCS1Q01581 AL137013.1-201ENST00000432946 1228 ntBASIC17.19■□□□□ 0.34
HMGCS1Q01581 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.19■□□□□ 0.34
HMGCS1Q01581 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 AL031432.5-201ENST00000641059 760 ntBASIC17.19■□□□□ 0.34
HMGCS1Q01581 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 AC133963.1-201ENST00000504166 1679 ntBASIC17.19■□□□□ 0.34
HMGCS1Q01581 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGCS1Q01581 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGCS1Q01581 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 KRT89P-201ENST00000620027 1478 ntBASIC17.18■□□□□ 0.34
HMGCS1Q01581 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 KRT8P47-201ENST00000604727 1398 ntBASIC17.18■□□□□ 0.34
HMGCS1Q01581 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 KRT18P65-201ENST00000439811 1286 ntBASIC17.18■□□□□ 0.34
HMGCS1Q01581 AC092597.1-201ENST00000487352 616 ntBASIC17.18■□□□□ 0.34
HMGCS1Q01581 YBX1P2-201ENST00000489612 999 ntBASIC17.18■□□□□ 0.34
HMGCS1Q01581 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 LINC00304-203ENST00000565008 1864 ntBASIC17.18■□□□□ 0.34
HMGCS1Q01581 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGCS1Q01581 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS1Q01581 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 HLA-F-220ENST00000434407 884 ntBASIC17.17■□□□□ 0.34
HMGCS1Q01581 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 BX664615.1-201ENST00000443558 458 ntBASIC17.17■□□□□ 0.34
HMGCS1Q01581 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 AC004263.2-201ENST00000617183 678 ntBASIC17.17■□□□□ 0.34
HMGCS1Q01581 AC073508.3-201ENST00000619697 1419 ntBASIC17.17■□□□□ 0.34
HMGCS1Q01581 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.17■□□□□ 0.34
HMGCS1Q01581 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS1Q01581 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS1Q01581 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS1Q01581 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms