Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.18■□□□□ 0.82
CCNA1P78396 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.18■□□□□ 0.82
CCNA1P78396 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CCNA1P78396 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.18■□□□□ 0.82
CCNA1P78396 AC254562.1-201ENST00000417586 456 ntBASIC20.18■□□□□ 0.82
CCNA1P78396 HCG4B-203ENST00000450128 991 ntBASIC20.18■□□□□ 0.82
CCNA1P78396 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.18■□□□□ 0.82
CCNA1P78396 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC20.18■□□□□ 0.82
CCNA1P78396 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.18■□□□□ 0.82
CCNA1P78396 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.18■□□□□ 0.82
CCNA1P78396 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.18■□□□□ 0.82
CCNA1P78396 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CCNA1P78396 MIR4469-201ENST00000583919 79 ntBASIC20.18■□□□□ 0.82
CCNA1P78396 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CCNA1P78396 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCNA1P78396 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CCNA1P78396 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.17■□□□□ 0.82
CCNA1P78396 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.17■□□□□ 0.82
CCNA1P78396 AC148477.5-201ENST00000625164 1645 ntBASIC20.17■□□□□ 0.82
CCNA1P78396 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CCNA1P78396 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.17■□□□□ 0.82
CCNA1P78396 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.17■□□□□ 0.82
CCNA1P78396 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.17■□□□□ 0.82
CCNA1P78396 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.17■□□□□ 0.82
CCNA1P78396 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.17■□□□□ 0.82
CCNA1P78396 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.17■□□□□ 0.82
CCNA1P78396 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CCNA1P78396 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.17■□□□□ 0.82
CCNA1P78396 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CCNA1P78396 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.17■□□□□ 0.82
CCNA1P78396 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCNA1P78396 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCNA1P78396 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.16■□□□□ 0.82
CCNA1P78396 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCNA1P78396 MKNK2P1-201ENST00000437526 628 ntBASIC20.16■□□□□ 0.82
CCNA1P78396 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.16■□□□□ 0.82
CCNA1P78396 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.16■□□□□ 0.82
CCNA1P78396 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.16■□□□□ 0.82
CCNA1P78396 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.16■□□□□ 0.82
CCNA1P78396 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.16■□□□□ 0.82
CCNA1P78396 AC092865.6-201ENST00000642101 219 ntBASIC20.16■□□□□ 0.82
CCNA1P78396 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
CCNA1P78396 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.16■□□□□ 0.82
CCNA1P78396 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCNA1P78396 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 AC018445.3-201ENST00000624177 1945 ntBASIC20.15■□□□□ 0.82
CCNA1P78396 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CCNA1P78396 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.15■□□□□ 0.82
CCNA1P78396 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
CCNA1P78396 METTL21AP1-201ENST00000438852 635 ntBASIC20.15■□□□□ 0.82
CCNA1P78396 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms