Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA3P55318 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC13.41□□□□□ -0.26
FOXA3P55318 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA3P55318 Six3os1_6.1-201ENST00000620790 196 ntBASIC13.41□□□□□ -0.26
FOXA3P55318 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA3P55318 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA3P55318 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.41□□□□□ -0.26
FOXA3P55318 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
FOXA3P55318 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 FLJ38576-201ENST00000623820 2459 ntBASIC13.4□□□□□ -0.26
FOXA3P55318 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 LINC00554-201ENST00000564841 3011 ntBASIC13.4□□□□□ -0.26
FOXA3P55318 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.4□□□□□ -0.26
FOXA3P55318 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
FOXA3P55318 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 PCDHA1-201ENST00000378133 2726 ntBASIC13.4□□□□□ -0.26
FOXA3P55318 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
FOXA3P55318 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 DUTP2-201ENST00000519164 463 ntBASIC13.4□□□□□ -0.26
FOXA3P55318 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 OAS3-207ENST00000551007 998 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA3P55318 SOX15-203ENST00000570788 1093 ntBASIC13.4□□□□□ -0.26
FOXA3P55318 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC13.4□□□□□ -0.26
FOXA3P55318 KLF2-202ENST00000592003 564 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA3P55318 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC13.4□□□□□ -0.26
FOXA3P55318 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms