Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
HOXD13P35453 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD13P35453 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD13P35453 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD13P35453 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXD13P35453 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXD13P35453 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD13P35453 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXD13P35453 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HOXD13P35453 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
HOXD13P35453 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HOXD13P35453 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXD13P35453 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 UPK3BP1-201ENST00000428678 509 ntBASIC19.43■□□□□ 0.7
HOXD13P35453 LINC00265-3P-201ENST00000447588 903 ntBASIC19.43■□□□□ 0.7
HOXD13P35453 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.43■□□□□ 0.7
HOXD13P35453 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXD13P35453 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HOXD13P35453 BNIP3P18-201ENST00000593976 575 ntBASIC19.43■□□□□ 0.7
HOXD13P35453 AC019129.2-201ENST00000609837 1235 ntBASIC19.43■□□□□ 0.7
HOXD13P35453 AC093458.2-201ENST00000623150 629 ntBASIC19.43■□□□□ 0.7
HOXD13P35453 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXD13P35453 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD13P35453 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXD13P35453 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 AC141586.5-201ENST00000624546 2050 ntBASIC19.42■□□□□ 0.7
HOXD13P35453 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 NSUN5P1-202ENST00000421140 1535 ntBASIC19.42■□□□□ 0.7
HOXD13P35453 NSUN5P2-203ENST00000457352 1529 ntBASIC19.42■□□□□ 0.7
HOXD13P35453 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXD13P35453 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXD13P35453 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.42■□□□□ 0.7
HOXD13P35453 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HOXD13P35453 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 SIRPAP1-201ENST00000448467 1770 ntBASIC19.42■□□□□ 0.7
HOXD13P35453 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD13P35453 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD13P35453 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
HOXD13P35453 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
HOXD13P35453 AC092329.2-201ENST00000598402 547 ntBASIC19.41■□□□□ 0.7
HOXD13P35453 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXD13P35453 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXD13P35453 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD13P35453 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HOXD13P35453 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
HOXD13P35453 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXD13P35453 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXD13P35453 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXD13P35453 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.4■□□□□ 0.7
HOXD13P35453 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HOXD13P35453 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD13P35453 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms