Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
COL6A2P12110 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
COL6A2P12110 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL6A2P12110 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A2P12110 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A2P12110 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A2P12110 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A2P12110 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A2P12110 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A2P12110 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.62■□□□□ 0.41
COL6A2P12110 AC141257.4-201ENST00000634557 245 ntBASIC17.62■□□□□ 0.41
COL6A2P12110 AC136944.6-201ENST00000634818 245 ntBASIC17.62■□□□□ 0.41
COL6A2P12110 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A2P12110 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A2P12110 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.62■□□□□ 0.41
COL6A2P12110 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A2P12110 AD000864.1-201ENST00000624076 2295 ntBASIC17.61■□□□□ 0.41
COL6A2P12110 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
COL6A2P12110 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL6A2P12110 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A2P12110 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A2P12110 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A2P12110 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A2P12110 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A2P12110 AC066615.1-201ENST00000640911 628 ntBASIC17.61■□□□□ 0.41
COL6A2P12110 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 KRT18P22-201ENST00000402024 1347 ntBASIC17.61■□□□□ 0.41
COL6A2P12110 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL6A2P12110 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A2P12110 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL6A2P12110 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.6■□□□□ 0.41
COL6A2P12110 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A2P12110 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A2P12110 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
COL6A2P12110 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A2P12110 GCSHP2-201ENST00000560971 527 ntBASIC17.6■□□□□ 0.41
COL6A2P12110 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.6■□□□□ 0.41
COL6A2P12110 AC009154.2-201ENST00000621177 724 ntBASIC17.6■□□□□ 0.41
COL6A2P12110 KRT8P47-201ENST00000604727 1398 ntBASIC17.6■□□□□ 0.41
COL6A2P12110 LINC01568-207ENST00000641790 1380 ntBASIC17.6■□□□□ 0.41
COL6A2P12110 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.6■□□□□ 0.41
COL6A2P12110 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
COL6A2P12110 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
COL6A2P12110 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A2P12110 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A2P12110 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A2P12110 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A2P12110 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A2P12110 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A2P12110 PCDHA12-202ENST00000613593 2588 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms