Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.33■□□□□ 0.36
HOXC4P09017 KLF4P1-201ENST00000412782 1185 ntBASIC17.33■□□□□ 0.36
HOXC4P09017 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC4P09017 SIGLEC30P-201ENST00000455569 941 ntBASIC17.33■□□□□ 0.36
HOXC4P09017 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXC4P09017 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXC4P09017 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXC4P09017 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.33■□□□□ 0.36
HOXC4P09017 AC105339.3-201ENST00000560043 636 ntBASIC17.33■□□□□ 0.36
HOXC4P09017 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HOXC4P09017 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HOXC4P09017 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
HOXC4P09017 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXC4P09017 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HOXC4P09017 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXC4P09017 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HOXC4P09017 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXC4P09017 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HOXC4P09017 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
HOXC4P09017 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HOXC4P09017 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXC4P09017 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXC4P09017 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HOXC4P09017 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXC4P09017 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.32■□□□□ 0.36
HOXC4P09017 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.32■□□□□ 0.36
HOXC4P09017 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXC4P09017 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXC4P09017 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
HOXC4P09017 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HOXC4P09017 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXC4P09017 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HOXC4P09017 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HOXC4P09017 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXC4P09017 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HOXC4P09017 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 IGHV3-22-201ENST00000520721 359 ntBASIC17.31■□□□□ 0.36
HOXC4P09017 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXC4P09017 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXC4P09017 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.31■□□□□ 0.36
HOXC4P09017 AC006557.2-201ENST00000592985 1240 ntBASIC17.31■□□□□ 0.36
HOXC4P09017 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXC4P09017 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXC4P09017 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXC4P09017 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 AC104581.1-202ENST00000635932 2618 ntBASIC17.31■□□□□ 0.36
HOXC4P09017 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXC4P09017 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HOXC4P09017 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HOXC4P09017 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
HOXC4P09017 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXC4P09017 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HOXC4P09017 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXC4P09017 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms