Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 MRPL20P1-201ENST00000400819 433 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 AC023274.1-201ENST00000418278 595 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.67■□□□□ 0.9
COL2A1P02458 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.67■□□□□ 0.9
COL2A1P02458 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.67■□□□□ 0.9
COL2A1P02458 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL2A1P02458 AP001160.2-201ENST00000596071 487 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 AL355385.1-201ENST00000606123 409 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 AL020996.1-203ENST00000536896 2307 ntBASIC20.67■□□□□ 0.9
COL2A1P02458 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL2A1P02458 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL2A1P02458 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.66■□□□□ 0.9
COL2A1P02458 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.66■□□□□ 0.9
COL2A1P02458 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL2A1P02458 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 LINC00982-205ENST00000420957 435 ntBASIC20.66■□□□□ 0.9
COL2A1P02458 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.66■□□□□ 0.9
COL2A1P02458 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.66■□□□□ 0.9
COL2A1P02458 AC112482.1-201ENST00000492080 688 ntBASIC20.66■□□□□ 0.9
COL2A1P02458 MIR3687-2-201ENST00000577708 61 ntBASIC20.66■□□□□ 0.9
COL2A1P02458 MIR3687-1-201ENST00000614492 61 ntBASIC20.66■□□□□ 0.9
COL2A1P02458 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.66■□□□□ 0.9
COL2A1P02458 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.66■□□□□ 0.9
COL2A1P02458 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL2A1P02458 AC098818.2-201ENST00000564925 2320 ntBASIC20.65■□□□□ 0.9
COL2A1P02458 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL2A1P02458 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL2A1P02458 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL2A1P02458 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL2A1P02458 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.65■□□□□ 0.9
COL2A1P02458 ALG1L5P-201ENST00000482043 771 ntBASIC20.65■□□□□ 0.9
COL2A1P02458 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.65■□□□□ 0.9
COL2A1P02458 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL2A1P02458 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.65■□□□□ 0.9
COL2A1P02458 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.65■□□□□ 0.9
COL2A1P02458 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.65■□□□□ 0.9
COL2A1P02458 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL2A1P02458 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL2A1P02458 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL2A1P02458 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
COL2A1P02458 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL2A1P02458 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL2A1P02458 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.64■□□□□ 0.89
COL2A1P02458 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL2A1P02458 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.64■□□□□ 0.89
COL2A1P02458 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.64■□□□□ 0.89
COL2A1P02458 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
COL2A1P02458 AC010507.1-201ENST00000633895 436 ntBASIC20.64■□□□□ 0.89
COL2A1P02458 AC097637.2-201ENST00000624096 1997 ntBASIC20.64■□□□□ 0.89
COL2A1P02458 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL2A1P02458 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.64■□□□□ 0.89
COL2A1P02458 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COL2A1P02458 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL2A1P02458 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL2A1P02458 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL2A1P02458 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
COL2A1P02458 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
COL2A1P02458 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL2A1P02458 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.63■□□□□ 0.89
COL2A1P02458 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
COL2A1P02458 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.63■□□□□ 0.89
COL2A1P02458 GGTLC5P-201ENST00000617623 998 ntBASIC20.63■□□□□ 0.89
COL2A1P02458 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.63■□□□□ 0.89
COL2A1P02458 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
COL2A1P02458 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.63■□□□□ 0.89
COL2A1P02458 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.63■□□□□ 0.89
COL2A1P02458 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms