Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CPSF4LA6NMK7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 GCSHP2-201ENST00000560971 527 ntBASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CPSF4LA6NMK7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 AL023973.1-201ENST00000624619 620 ntBASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CPSF4LA6NMK7 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CPSF4LA6NMK7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
CPSF4LA6NMK7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CPSF4LA6NMK7 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CPSF4LA6NMK7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms