Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 AD000864.1-201ENST00000624076 2295 ntBASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHA3Q9Y5H8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
PCDHA3Q9Y5H8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
PCDHA3Q9Y5H8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHA3Q9Y5H8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHA3Q9Y5H8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 AL136038.4-201ENST00000603606 1261 ntBASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHA3Q9Y5H8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 AC140113.3-201ENST00000605663 199 ntBASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 AC106820.2-201ENST00000563775 3264 ntBASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PCDHA3Q9Y5H8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 SLC25A3P1-201ENST00000443844 931 ntBASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 AC009154.2-201ENST00000621177 724 ntBASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 AL031432.5-201ENST00000641059 760 ntBASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
PCDHA3Q9Y5H8 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHA3Q9Y5H8 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms