Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH4P55283 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH4P55283 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH4P55283 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH4P55283 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH4P55283 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH4P55283 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH4P55283 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH4P55283 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH4P55283 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.23■□□□□ 0.51
CDH4P55283 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH4P55283 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.23■□□□□ 0.51
CDH4P55283 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH4P55283 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH4P55283 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CDH4P55283 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH4P55283 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH4P55283 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
CDH4P55283 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.23■□□□□ 0.51
CDH4P55283 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDH4P55283 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDH4P55283 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.22■□□□□ 0.51
CDH4P55283 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.22■□□□□ 0.51
CDH4P55283 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH4P55283 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 BX276092.7-203ENST00000637198 1536 ntBASIC18.22■□□□□ 0.51
CDH4P55283 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH4P55283 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
CDH4P55283 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CDH4P55283 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CDH4P55283 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CDH4P55283 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CDH4P55283 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CDH4P55283 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.21■□□□□ 0.51
CDH4P55283 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.21■□□□□ 0.51
CDH4P55283 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.21■□□□□ 0.51
CDH4P55283 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 RN7SL510P-201ENST00000581311 263 ntBASIC18.21■□□□□ 0.51
CDH4P55283 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.21■□□□□ 0.51
CDH4P55283 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH4P55283 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CDH4P55283 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.21■□□□□ 0.51
CDH4P55283 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH4P55283 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH4P55283 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CDH4P55283 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH4P55283 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.2■□□□□ 0.5
CDH4P55283 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CDH4P55283 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH4P55283 AC004870.1-201ENST00000315132 882 ntBASIC18.2■□□□□ 0.5
CDH4P55283 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH4P55283 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms