Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 AC141586.3-201ENST00000562166 1838 ntBASIC14.61□□□□□ -0.07
CDX1P47902 AC022211.2-201ENST00000585075 2527 ntBASIC14.61□□□□□ -0.07
CDX1P47902 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
CDX1P47902 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CDX1P47902 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.61□□□□□ -0.07
CDX1P47902 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.61□□□□□ -0.07
CDX1P47902 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDX1P47902 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.6□□□□□ -0.07
CDX1P47902 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 AL512353.2-201ENST00000448759 1962 ntBASIC14.6□□□□□ -0.07
CDX1P47902 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.6□□□□□ -0.07
CDX1P47902 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.6□□□□□ -0.07
CDX1P47902 AC022616.7-201ENST00000525383 220 ntBASIC14.6□□□□□ -0.07
CDX1P47902 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.6□□□□□ -0.07
CDX1P47902 NT5C-211ENST00000582170 653 ntTSL 3 BASIC14.6□□□□□ -0.07
CDX1P47902 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.6□□□□□ -0.07
CDX1P47902 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 AC011558.1-201ENST00000623459 338 ntBASIC14.6□□□□□ -0.07
CDX1P47902 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CDX1P47902 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC14.6□□□□□ -0.07
CDX1P47902 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.6□□□□□ -0.07
CDX1P47902 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CDX1P47902 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.6□□□□□ -0.07
CDX1P47902 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.6□□□□□ -0.07
CDX1P47902 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDX1P47902 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CDX1P47902 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.59□□□□□ -0.07
CDX1P47902 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CDX1P47902 FAM8A6P-201ENST00000407496 1135 ntBASIC14.59□□□□□ -0.07
CDX1P47902 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC14.59□□□□□ -0.07
CDX1P47902 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 HOMER2P1-201ENST00000455653 964 ntBASIC14.59□□□□□ -0.07
CDX1P47902 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 MIR4674-201ENST00000582457 87 ntBASIC14.59□□□□□ -0.07
CDX1P47902 CR769767.2-201ENST00000622735 460 ntBASIC14.59□□□□□ -0.07
CDX1P47902 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.59□□□□□ -0.07
CDX1P47902 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.59□□□□□ -0.07
CDX1P47902 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms