Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN4P29074 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN4P29074 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
PTPN4P29074 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
PTPN4P29074 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN4P29074 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.95■□□□□ 0.46
PTPN4P29074 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PTPN4P29074 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN4P29074 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTPN4P29074 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.95■□□□□ 0.46
PTPN4P29074 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.95■□□□□ 0.46
PTPN4P29074 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.95■□□□□ 0.46
PTPN4P29074 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN4P29074 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.95■□□□□ 0.46
PTPN4P29074 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN4P29074 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN4P29074 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.95■□□□□ 0.46
PTPN4P29074 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.94■□□□□ 0.46
PTPN4P29074 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PTPN4P29074 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.94■□□□□ 0.46
PTPN4P29074 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.94■□□□□ 0.46
PTPN4P29074 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PTPN4P29074 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.94■□□□□ 0.46
PTPN4P29074 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.94■□□□□ 0.46
PTPN4P29074 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.94■□□□□ 0.46
PTPN4P29074 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.94■□□□□ 0.46
PTPN4P29074 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.94■□□□□ 0.46
PTPN4P29074 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.94■□□□□ 0.46
PTPN4P29074 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.94■□□□□ 0.46
PTPN4P29074 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 AL023973.1-201ENST00000624619 620 ntBASIC17.94■□□□□ 0.46
PTPN4P29074 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PTPN4P29074 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTPN4P29074 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PTPN4P29074 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PTPN4P29074 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PTPN4P29074 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 AP000523.1-201ENST00000398242 1049 ntBASIC17.93■□□□□ 0.46
PTPN4P29074 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 AL441883.1-201ENST00000566170 1045 ntBASIC17.93■□□□□ 0.46
PTPN4P29074 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.93■□□□□ 0.46
PTPN4P29074 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms