Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH3P20585 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
MSH3P20585 AC020916.1-201ENST00000587762 1774 ntBASIC17.78■□□□□ 0.44
MSH3P20585 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
MSH3P20585 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
MSH3P20585 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
MSH3P20585 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
MSH3P20585 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.77■□□□□ 0.44
MSH3P20585 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
MSH3P20585 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.77■□□□□ 0.44
MSH3P20585 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 MTCL1P1-201ENST00000446207 792 ntBASIC17.77■□□□□ 0.44
MSH3P20585 RN7SL606P-201ENST00000472779 293 ntBASIC17.77■□□□□ 0.44
MSH3P20585 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.77■□□□□ 0.44
MSH3P20585 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.77■□□□□ 0.44
MSH3P20585 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.77■□□□□ 0.44
MSH3P20585 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.77■□□□□ 0.44
MSH3P20585 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.77■□□□□ 0.44
MSH3P20585 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.77■□□□□ 0.44
MSH3P20585 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.77■□□□□ 0.44
MSH3P20585 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSH3P20585 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH3P20585 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.77■□□□□ 0.43
MSH3P20585 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
MSH3P20585 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.77■□□□□ 0.43
MSH3P20585 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH3P20585 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
MSH3P20585 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
MSH3P20585 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
MSH3P20585 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH3P20585 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.76■□□□□ 0.43
MSH3P20585 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSH3P20585 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
MSH3P20585 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
MSH3P20585 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.76■□□□□ 0.43
MSH3P20585 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.76■□□□□ 0.43
MSH3P20585 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
MSH3P20585 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.76■□□□□ 0.43
MSH3P20585 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.76■□□□□ 0.43
MSH3P20585 AC112698.1-201ENST00000510299 916 ntBASIC17.76■□□□□ 0.43
MSH3P20585 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSH3P20585 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.76■□□□□ 0.43
MSH3P20585 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.76■□□□□ 0.43
MSH3P20585 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
MSH3P20585 AC011840.4-201ENST00000578471 627 ntBASIC17.76■□□□□ 0.43
MSH3P20585 AP002414.4-201ENST00000589764 1148 ntBASIC17.76■□□□□ 0.43
MSH3P20585 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.76■□□□□ 0.43
MSH3P20585 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
MSH3P20585 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
MSH3P20585 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.76■□□□□ 0.43
MSH3P20585 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH3P20585 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.76■□□□□ 0.43
MSH3P20585 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms