Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX4O14627 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.1■□□□□ 0.33
CDX4O14627 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX4O14627 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX4O14627 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.1■□□□□ 0.33
CDX4O14627 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDX4O14627 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX4O14627 AJ011932.1-201ENST00000621707 465 ntBASIC17.1■□□□□ 0.33
CDX4O14627 AL035252.4-201ENST00000624174 288 ntBASIC17.1■□□□□ 0.33
CDX4O14627 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX4O14627 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX4O14627 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX4O14627 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX4O14627 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 AC015922.1-201ENST00000421102 1152 ntBASIC17.09■□□□□ 0.33
CDX4O14627 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.09■□□□□ 0.33
CDX4O14627 FAM86GP-201ENST00000448322 971 ntBASIC17.09■□□□□ 0.33
CDX4O14627 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.09■□□□□ 0.33
CDX4O14627 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.09■□□□□ 0.33
CDX4O14627 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.09■□□□□ 0.33
CDX4O14627 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX4O14627 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX4O14627 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDX4O14627 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDX4O14627 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
CDX4O14627 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
CDX4O14627 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX4O14627 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX4O14627 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX4O14627 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.08■□□□□ 0.33
CDX4O14627 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX4O14627 ESPNP-201ENST00000270691 2015 ntBASIC17.08■□□□□ 0.33
CDX4O14627 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CDX4O14627 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX4O14627 AC063926.2-201ENST00000623766 1308 ntBASIC17.08■□□□□ 0.32
CDX4O14627 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX4O14627 AC005034.1-201ENST00000426657 489 ntBASIC17.08■□□□□ 0.32
CDX4O14627 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.08■□□□□ 0.32
CDX4O14627 RNA5SP421-201ENST00000516864 134 ntBASIC17.08■□□□□ 0.32
CDX4O14627 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.08■□□□□ 0.32
CDX4O14627 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
CDX4O14627 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.08■□□□□ 0.32
CDX4O14627 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX4O14627 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.08■□□□□ 0.32
CDX4O14627 AC015911.4-201ENST00000588022 1070 ntBASIC17.08■□□□□ 0.32
CDX4O14627 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX4O14627 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CDX4O14627 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX4O14627 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX4O14627 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX4O14627 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.07■□□□□ 0.32
CDX4O14627 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX4O14627 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX4O14627 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX4O14627 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CDX4O14627 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.07■□□□□ 0.32
CDX4O14627 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CDX4O14627 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.07■□□□□ 0.32
CDX4O14627 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.07■□□□□ 0.32
CDX4O14627 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.07■□□□□ 0.32
CDX4O14627 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.07■□□□□ 0.32
CDX4O14627 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms