Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SLC28A1O00337 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SLC28A1O00337 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.21■□□□□ 0.35
SLC28A1O00337 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SLC28A1O00337 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.21■□□□□ 0.35
SLC28A1O00337 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 DDX43P3-201ENST00000441064 443 ntBASIC17.21■□□□□ 0.35
SLC28A1O00337 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.21■□□□□ 0.35
SLC28A1O00337 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
SLC28A1O00337 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.21■□□□□ 0.35
SLC28A1O00337 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
SLC28A1O00337 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SLC28A1O00337 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.21■□□□□ 0.35
SLC28A1O00337 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.21■□□□□ 0.35
SLC28A1O00337 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.21■□□□□ 0.35
SLC28A1O00337 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC28A1O00337 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SLC28A1O00337 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.21■□□□□ 0.34
SLC28A1O00337 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SLC28A1O00337 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.2■□□□□ 0.34
SLC28A1O00337 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC28A1O00337 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.2■□□□□ 0.34
SLC28A1O00337 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 AL031432.5-201ENST00000641059 760 ntBASIC17.2■□□□□ 0.34
SLC28A1O00337 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SLC28A1O00337 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC28A1O00337 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SLC28A1O00337 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC28A1O00337 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SLC28A1O00337 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 AC009949.1-201ENST00000623048 1830 ntBASIC17.19■□□□□ 0.34
SLC28A1O00337 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SLC28A1O00337 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.19■□□□□ 0.34
SLC28A1O00337 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 RASA4DP-201ENST00000460726 1199 ntBASIC17.19■□□□□ 0.34
SLC28A1O00337 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.19■□□□□ 0.34
SLC28A1O00337 AC145285.6-201ENST00000604632 637 ntBASIC17.19■□□□□ 0.34
SLC28A1O00337 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SLC28A1O00337 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC28A1O00337 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SLC28A1O00337 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.18■□□□□ 0.34
SLC28A1O00337 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.18■□□□□ 0.34
SLC28A1O00337 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SLC28A1O00337 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SLC28A1O00337 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC28A1O00337 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.18■□□□□ 0.34
SLC28A1O00337 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC28A1O00337 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SLC28A1O00337 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC28A1O00337 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC28A1O00337 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
SLC28A1O00337 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC28A1O00337 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms