Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 LAGE3P1-201ENST00000425356 484 ntBASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 METTL21AP1-201ENST00000438852 635 ntBASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIMD1Q9UGP4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 AC064836.3-201ENST00000607928 673 ntBASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMD1Q9UGP4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMD1Q9UGP4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 AP006288.1-201ENST00000446065 395 ntBASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 BX005266.1-201ENST00000473402 457 ntBASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 AC005829.1-201ENST00000570002 483 ntBASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 MIR3197-201ENST00000582241 73 ntBASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.58■□□□□ 0.56
LIMD1Q9UGP4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms