Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 AC097488.1-201ENST00000507834 756 ntBASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 AC096733.2-201ENST00000609937 1394 ntBASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 MESTP1-201ENST00000404287 994 ntBASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 MIR3180-5-201ENST00000583743 153 ntBASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 AC007326.2-201ENST00000624224 7579 ntBASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 KRT8P50-201ENST00000562022 1438 ntBASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CHMP1AQ9HD42 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CRYGFP-201ENST00000418459 633 ntBASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms