Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRRC40Q9H9A6 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 AC020916.1-201ENST00000587762 1774 ntBASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 IGHGP-201ENST00000390555 1178 ntBASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 TSPY12P-201ENST00000421279 868 ntBASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LRRC40Q9H9A6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRRC40Q9H9A6 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 AC104076.2-201ENST00000448912 469 ntBASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 AC063952.2-201ENST00000498792 1227 ntBASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 HYMAI.1-201ENST00000620949 238 ntBASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 LINC01311-201ENST00000565162 1445 ntBASIC18.15■□□□□ 0.5
LRRC40Q9H9A6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LRRC40Q9H9A6 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LRRC40Q9H9A6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LRRC40Q9H9A6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LRRC40Q9H9A6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LRRC40Q9H9A6 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LRRC40Q9H9A6 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LRRC40Q9H9A6 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRRC40Q9H9A6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRRC40Q9H9A6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms