Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 HTR7P1-202ENST00000624664 4411 ntBASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 LINC00896-202ENST00000609602 2128 ntBASIC13.84□□□□□ -0.19
CCDC140Q96MF4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC140Q96MF4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC140Q96MF4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC140Q96MF4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC140Q96MF4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC140Q96MF4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 RN7SL606P-201ENST00000472779 293 ntBASIC13.83□□□□□ -0.2
CCDC140Q96MF4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 AL445228.2-201ENST00000605589 952 ntBASIC13.83□□□□□ -0.2
CCDC140Q96MF4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CCDC140Q96MF4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 MIR1224-201ENST00000408193 85 ntBASIC13.82□□□□□ -0.2
CCDC140Q96MF4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 DDX43P3-201ENST00000441064 443 ntBASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AC090616.6-201ENST00000582640 721 ntBASIC13.82□□□□□ -0.2
CCDC140Q96MF4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AL121672.3-201ENST00000608644 468 ntBASIC13.82□□□□□ -0.2
CCDC140Q96MF4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 IER3-202ENST00000376377 1350 ntBASIC13.82□□□□□ -0.2
CCDC140Q96MF4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 AC026471.1-201ENST00000564629 3026 ntBASIC13.82□□□□□ -0.2
CCDC140Q96MF4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC140Q96MF4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms