Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 ELL2P1-201ENST00000413990 1906 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 GMCL1P1-201ENST00000463439 1581 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 ELK2BP-201ENST00000415014 1224 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 FAM8A3P-201ENST00000427218 844 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 PRSS29P-201ENST00000440800 595 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 CEND1P1-201ENST00000451006 455 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 AL078644.1-201ENST00000609881 752 ntBASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC44A3Q8N4M1 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 IGHV3-65-201ENST00000523210 341 ntBASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 AC004790.2-201ENST00000623588 572 ntBASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC44A3Q8N4M1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 GPR89P-201ENST00000407924 1495 ntBASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 COX5BP2-201ENST00000392354 334 ntBASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 AC008667.4-201ENST00000607370 168 ntBASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC44A3Q8N4M1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
SLC44A3Q8N4M1 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 MIR770-201ENST00000390219 98 ntBASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 RPS15P9-201ENST00000494093 319 ntBASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms