Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 MTCL1P1-201ENST00000446207 792 ntBASIC16.96■□□□□ 0.31
RAE1P78406 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
RAE1P78406 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.96■□□□□ 0.31
RAE1P78406 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.96■□□□□ 0.31
RAE1P78406 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.96■□□□□ 0.31
RAE1P78406 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.96■□□□□ 0.31
RAE1P78406 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.96■□□□□ 0.31
RAE1P78406 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 AC020916.1-201ENST00000587762 1774 ntBASIC16.96■□□□□ 0.31
RAE1P78406 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
RAE1P78406 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RAE1P78406 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.96■□□□□ 0.3
RAE1P78406 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.96■□□□□ 0.3
RAE1P78406 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.96■□□□□ 0.3
RAE1P78406 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
RAE1P78406 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RAE1P78406 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.96■□□□□ 0.3
RAE1P78406 Z83836.1-201ENST00000624605 1642 ntBASIC16.96■□□□□ 0.3
RAE1P78406 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.95■□□□□ 0.3
RAE1P78406 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RAE1P78406 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
RAE1P78406 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.95■□□□□ 0.3
RAE1P78406 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.95■□□□□ 0.3
RAE1P78406 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.95■□□□□ 0.3
RAE1P78406 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.95■□□□□ 0.3
RAE1P78406 LINC01451-201ENST00000623792 534 ntBASIC16.95■□□□□ 0.3
RAE1P78406 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.95■□□□□ 0.3
RAE1P78406 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
RAE1P78406 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RAE1P78406 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.95■□□□□ 0.3
RAE1P78406 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.95■□□□□ 0.3
RAE1P78406 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RAE1P78406 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RAE1P78406 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 AL671277.2-201ENST00000458060 996 ntBASIC16.94■□□□□ 0.3
RAE1P78406 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.94■□□□□ 0.3
RAE1P78406 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.94■□□□□ 0.3
RAE1P78406 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
RAE1P78406 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RAE1P78406 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.94■□□□□ 0.3
RAE1P78406 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.94■□□□□ 0.3
RAE1P78406 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.93■□□□□ 0.3
RAE1P78406 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
RAE1P78406 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
RAE1P78406 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
RAE1P78406 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.93■□□□□ 0.3
RAE1P78406 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RAE1P78406 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms