Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TPM4P67936 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.06■□□□□ 0.8
TPM4P67936 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM4P67936 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TPM4P67936 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM4P67936 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM4P67936 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.05■□□□□ 0.8
TPM4P67936 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 AC022898.2-201ENST00000616822 1312 ntBASIC20.05■□□□□ 0.8
TPM4P67936 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
TPM4P67936 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TPM4P67936 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 FAM197Y1-201ENST00000421178 764 ntBASIC20.05■□□□□ 0.8
TPM4P67936 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.05■□□□□ 0.8
TPM4P67936 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.05■□□□□ 0.8
TPM4P67936 AC097488.1-201ENST00000507834 756 ntBASIC20.05■□□□□ 0.8
TPM4P67936 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.05■□□□□ 0.8
TPM4P67936 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.05■□□□□ 0.8
TPM4P67936 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 AL139384.1-201ENST00000612143 3047 ntBASIC20.05■□□□□ 0.8
TPM4P67936 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.05■□□□□ 0.8
TPM4P67936 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM4P67936 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM4P67936 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TPM4P67936 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM4P67936 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TPM4P67936 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM4P67936 AC090192.1-201ENST00000517740 490 ntBASIC20.04■□□□□ 0.8
TPM4P67936 KRT18P6-201ENST00000555540 1265 ntBASIC20.04■□□□□ 0.8
TPM4P67936 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
TPM4P67936 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM4P67936 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM4P67936 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM4P67936 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM4P67936 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM4P67936 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 AL135905.2-201ENST00000584934 1404 ntBASIC20.03■□□□□ 0.8
TPM4P67936 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 AL024508.2-201ENST00000607749 1894 ntBASIC20.03■□□□□ 0.8
TPM4P67936 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.03■□□□□ 0.8
TPM4P67936 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
TPM4P67936 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM4P67936 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.03■□□□□ 0.8
TPM4P67936 MIR3180-4-201ENST00000582223 153 ntBASIC20.03■□□□□ 0.8
TPM4P67936 MIR4674-201ENST00000582457 87 ntBASIC20.03■□□□□ 0.8
TPM4P67936 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.03■□□□□ 0.8
TPM4P67936 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.03■□□□□ 0.8
TPM4P67936 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TPM4P67936 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TPM4P67936 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM4P67936 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM4P67936 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM4P67936 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM4P67936 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.02■□□□□ 0.8
TPM4P67936 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM4P67936 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms