Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC068472.1-201ENST00000474589 881 ntBASIC18.69■□□□□ 0.58
HDAC4P56524 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.69■□□□□ 0.58
HDAC4P56524 AC116407.4-201ENST00000623319 1061 ntBASIC18.69■□□□□ 0.58
HDAC4P56524 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.69■□□□□ 0.58
HDAC4P56524 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC4P56524 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HDAC4P56524 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.69■□□□□ 0.58
HDAC4P56524 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC4P56524 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC4P56524 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.69■□□□□ 0.58
HDAC4P56524 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC4P56524 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HDAC4P56524 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HDAC4P56524 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
HDAC4P56524 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.69■□□□□ 0.58
HDAC4P56524 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC4P56524 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC4P56524 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.68■□□□□ 0.58
HDAC4P56524 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.68■□□□□ 0.58
HDAC4P56524 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.68■□□□□ 0.58
HDAC4P56524 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
HDAC4P56524 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.68■□□□□ 0.58
HDAC4P56524 PCDHB18P-201ENST00000524813 2368 ntBASIC18.68■□□□□ 0.58
HDAC4P56524 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HDAC4P56524 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.68■□□□□ 0.58
HDAC4P56524 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.68■□□□□ 0.58
HDAC4P56524 AC112698.1-201ENST00000510299 916 ntBASIC18.68■□□□□ 0.58
HDAC4P56524 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.68■□□□□ 0.58
HDAC4P56524 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.68■□□□□ 0.58
HDAC4P56524 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
HDAC4P56524 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.68■□□□□ 0.58
HDAC4P56524 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.68■□□□□ 0.58
HDAC4P56524 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HDAC4P56524 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
HDAC4P56524 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HDAC4P56524 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HDAC4P56524 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
HDAC4P56524 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDAC4P56524 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HDAC4P56524 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HDAC4P56524 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
HDAC4P56524 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.67■□□□□ 0.58
HDAC4P56524 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.67■□□□□ 0.58
HDAC4P56524 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 PCED1CP-201ENST00000419887 785 ntBASIC18.67■□□□□ 0.58
HDAC4P56524 MTCL1P1-201ENST00000446207 792 ntBASIC18.67■□□□□ 0.58
HDAC4P56524 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.67■□□□□ 0.58
HDAC4P56524 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.67■□□□□ 0.58
HDAC4P56524 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.67■□□□□ 0.58
HDAC4P56524 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.67■□□□□ 0.58
HDAC4P56524 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.67■□□□□ 0.58
HDAC4P56524 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.67■□□□□ 0.58
HDAC4P56524 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.67■□□□□ 0.58
HDAC4P56524 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.67■□□□□ 0.58
HDAC4P56524 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDAC4P56524 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
HDAC4P56524 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HDAC4P56524 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 FZD10-202ENST00000539839 3282 ntBASIC18.66■□□□□ 0.58
HDAC4P56524 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.66■□□□□ 0.58
HDAC4P56524 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.66■□□□□ 0.58
HDAC4P56524 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.66■□□□□ 0.58
HDAC4P56524 RN7SL606P-201ENST00000472779 293 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms