Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CIITAP33076 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CIITAP33076 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CIITAP33076 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 AKR1C7P-201ENST00000305623 895 ntBASIC20.11■□□□□ 0.81
CIITAP33076 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.11■□□□□ 0.81
CIITAP33076 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.11■□□□□ 0.81
CIITAP33076 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
CIITAP33076 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.11■□□□□ 0.81
CIITAP33076 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CIITAP33076 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CIITAP33076 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.1■□□□□ 0.81
CIITAP33076 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
CIITAP33076 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CIITAP33076 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CIITAP33076 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.1■□□□□ 0.81
CIITAP33076 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
CIITAP33076 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.1■□□□□ 0.81
CIITAP33076 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 AC132008.2-207ENST00000454517 770 ntBASIC20.1■□□□□ 0.81
CIITAP33076 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.1■□□□□ 0.81
CIITAP33076 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.1■□□□□ 0.81
CIITAP33076 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.1■□□□□ 0.81
CIITAP33076 RN7SL510P-201ENST00000581311 263 ntBASIC20.1■□□□□ 0.81
CIITAP33076 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 REXO1L6P-202ENST00000619970 1078 ntBASIC20.1■□□□□ 0.81
CIITAP33076 BX276092.7-203ENST00000637198 1536 ntBASIC20.1■□□□□ 0.81
CIITAP33076 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CIITAP33076 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.1■□□□□ 0.81
CIITAP33076 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
CIITAP33076 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.1■□□□□ 0.81
CIITAP33076 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CIITAP33076 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.09■□□□□ 0.81
CIITAP33076 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CIITAP33076 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
CIITAP33076 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CIITAP33076 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.09■□□□□ 0.81
CIITAP33076 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CIITAP33076 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CIITAP33076 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.09■□□□□ 0.81
CIITAP33076 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CIITAP33076 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.08■□□□□ 0.81
CIITAP33076 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.08■□□□□ 0.81
CIITAP33076 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.08■□□□□ 0.81
CIITAP33076 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CIITAP33076 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.08■□□□□ 0.81
CIITAP33076 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms