Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 AL355312.1-201ENST00000407115 2176 ntBASIC13.65□□□□□ -0.22
HLA-DMBP28068 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 PCDHA12-202ENST00000613593 2588 ntBASIC13.65□□□□□ -0.22
HLA-DMBP28068 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.23
HLA-DMBP28068 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 Telomerase-vert.1-201ENST00000363312 438 ntBASIC13.64□□□□□ -0.23
HLA-DMBP28068 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 AL049597.2-201ENST00000565575 961 ntBASIC13.64□□□□□ -0.23
HLA-DMBP28068 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DMBP28068 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DMBP28068 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.63□□□□□ -0.23
HLA-DMBP28068 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 MIR3180-4-201ENST00000582223 153 ntBASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms