Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
MSH3P20585 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.81■□□□□ 0.44
MSH3P20585 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.81■□□□□ 0.44
MSH3P20585 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH3P20585 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH3P20585 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
MSH3P20585 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
MSH3P20585 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.8■□□□□ 0.44
MSH3P20585 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
MSH3P20585 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 AL592071.1-201ENST00000611956 408 ntBASIC17.8■□□□□ 0.44
MSH3P20585 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
MSH3P20585 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
MSH3P20585 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.8■□□□□ 0.44
MSH3P20585 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH3P20585 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH3P20585 KRT18P1-202ENST00000452408 1331 ntBASIC17.79■□□□□ 0.44
MSH3P20585 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH3P20585 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
MSH3P20585 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.79■□□□□ 0.44
MSH3P20585 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.79■□□□□ 0.44
MSH3P20585 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
MSH3P20585 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH3P20585 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.79■□□□□ 0.44
MSH3P20585 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.79■□□□□ 0.44
MSH3P20585 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH3P20585 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH3P20585 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH3P20585 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 AP000997.3-201ENST00000623333 2250 ntBASIC17.78■□□□□ 0.44
MSH3P20585 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH3P20585 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 AC068472.1-201ENST00000474589 881 ntBASIC17.78■□□□□ 0.44
MSH3P20585 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH3P20585 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH3P20585 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
MSH3P20585 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 319.6 ms