Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
USP3Q9Y6I4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 AL591684.3-201ENST00000605187 298 ntBASIC18.68■□□□□ 0.58
USP3Q9Y6I4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP3Q9Y6I4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 AC067852.2-201ENST00000590513 2313 ntBASIC18.67■□□□□ 0.58
USP3Q9Y6I4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 RN7SL510P-201ENST00000581311 263 ntBASIC18.67■□□□□ 0.58
USP3Q9Y6I4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP3Q9Y6I4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 COX5BP2-201ENST00000392354 334 ntBASIC18.66■□□□□ 0.58
USP3Q9Y6I4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.66■□□□□ 0.58
USP3Q9Y6I4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms