Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 AC122714.2-201ENST00000502787 707 ntBASIC18.89■□□□□ 0.61
CDH9Q9ULB4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 KRT18P55-202ENST00000578578 1546 ntBASIC18.89■□□□□ 0.61
CDH9Q9ULB4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDH9Q9ULB4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 COX5BP2-201ENST00000392354 334 ntBASIC18.88■□□□□ 0.61
CDH9Q9ULB4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDH9Q9ULB4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AC026396.1-201ENST00000419388 421 ntBASIC18.87■□□□□ 0.61
CDH9Q9ULB4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 DDX43P3-201ENST00000441064 443 ntBASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AC079781.3-201ENST00000449110 356 ntBASIC18.87■□□□□ 0.61
CDH9Q9ULB4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AF238378.1-201ENST00000526806 358 ntBASIC18.87■□□□□ 0.61
CDH9Q9ULB4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 AL121912.1-201ENST00000603683 238 ntBASIC18.87■□□□□ 0.61
CDH9Q9ULB4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDH9Q9ULB4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms