Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIMD1Q9UGP4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 AC009947.1-201ENST00000444350 727 ntBASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 SDHAP2-201ENST00000455183 2001 ntBASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LIMD1Q9UGP4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMD1Q9UGP4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 AL032819.2-201ENST00000624543 2162 ntBASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMD1Q9UGP4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIMD1Q9UGP4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms