Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB4Q8WW32 AC079776.2-201ENST00000641154 1609 ntBASIC17.9■□□□□ 0.46
HMGB4Q8WW32 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 AC126763.1-201ENST00000552015 2118 ntBASIC17.9■□□□□ 0.46
HMGB4Q8WW32 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 RNA5SP416-201ENST00000516838 111 ntBASIC17.9■□□□□ 0.46
HMGB4Q8WW32 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.9■□□□□ 0.46
HMGB4Q8WW32 AL022326.1-202ENST00000641533 845 ntBASIC17.9■□□□□ 0.46
HMGB4Q8WW32 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 AC004817.3-201ENST00000602957 2129 ntBASIC17.9■□□□□ 0.46
HMGB4Q8WW32 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB4Q8WW32 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.89■□□□□ 0.46
HMGB4Q8WW32 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGB4Q8WW32 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGB4Q8WW32 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.46
HMGB4Q8WW32 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 AC010460.3-201ENST00000511359 1579 ntBASIC17.89■□□□□ 0.45
HMGB4Q8WW32 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 AC040169.1-201ENST00000565382 521 ntBASIC17.89■□□□□ 0.45
HMGB4Q8WW32 MIR3687-2-201ENST00000577708 61 ntBASIC17.89■□□□□ 0.45
HMGB4Q8WW32 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 MIR3687-1-201ENST00000614492 61 ntBASIC17.89■□□□□ 0.45
HMGB4Q8WW32 MIR1199-201ENST00000621445 119 ntBASIC17.89■□□□□ 0.45
HMGB4Q8WW32 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB4Q8WW32 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 RPS8P6-201ENST00000426177 609 ntBASIC17.88■□□□□ 0.45
HMGB4Q8WW32 GPX1P2-201ENST00000429271 606 ntBASIC17.88■□□□□ 0.45
HMGB4Q8WW32 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB4Q8WW32 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 PMPCAP1-201ENST00000508114 1576 ntBASIC17.87■□□□□ 0.45
HMGB4Q8WW32 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms