Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 CD63-210ENST00000550776 870 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 AP000867.4-201ENST00000641616 219 ntBASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC88AQ3V6T2 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 AC073592.4-201ENST00000623827 446 ntBASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 LINC00602-201ENST00000629776 2065 ntBASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 AC096633.1-201ENST00000422446 749 ntBASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC88AQ3V6T2 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 MRPL20P1-201ENST00000400819 433 ntBASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.74■■□□□ 1.07
CCDC88AQ3V6T2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 AC007274.1-201ENST00000439805 662 ntBASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 PRYP5-201ENST00000451909 266 ntBASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 AL035252.4-201ENST00000624174 288 ntBASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC88AQ3V6T2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 AC093214.1-201ENST00000511688 1107 ntBASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 KRT19P2-202ENST00000557173 1012 ntBASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms