Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP41Q3LFD5 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19■□□□□ 0.63
USP41Q3LFD5 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 AC025062.2-201ENST00000605477 670 ntBASIC19■□□□□ 0.63
USP41Q3LFD5 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19■□□□□ 0.63
USP41Q3LFD5 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19■□□□□ 0.63
USP41Q3LFD5 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
USP41Q3LFD5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19■□□□□ 0.63
USP41Q3LFD5 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 PHGDH-209ENST00000641074 1780 ntBASIC19■□□□□ 0.63
USP41Q3LFD5 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19■□□□□ 0.63
USP41Q3LFD5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 AC022898.2-201ENST00000616822 1312 ntBASIC19■□□□□ 0.63
USP41Q3LFD5 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 CROCCP3-202ENST00000420820 1947 ntBASIC18.99■□□□□ 0.63
USP41Q3LFD5 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP41Q3LFD5 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.99■□□□□ 0.63
USP41Q3LFD5 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 KRT18P13-201ENST00000400056 1290 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 AC122714.2-201ENST00000502787 707 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 POLD2P1-201ENST00000511220 997 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 IGHV3-22-201ENST00000520721 359 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 MTDHP4-201ENST00000600287 670 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 TERC-201ENST00000602385 541 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP41Q3LFD5 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 PMS2P7-201ENST00000506558 1336 ntBASIC18.98■□□□□ 0.63
USP41Q3LFD5 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
USP41Q3LFD5 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 DUTP2-201ENST00000519164 463 ntBASIC18.97■□□□□ 0.63
USP41Q3LFD5 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms