Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 PCDHB18P-201ENST00000524813 2368 ntBASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.52■□□□□ 0.4
PTCHD3Q3KNS1 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTCHD3Q3KNS1 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 ATP5G2P1-201ENST00000433580 426 ntBASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 BX276092.5-203ENST00000456199 560 ntBASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 CLEC4GP1-201ENST00000596555 870 ntBASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTCHD3Q3KNS1 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 GNAS-203ENST00000306120 1878 ntBASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AC012317.2-201ENST00000623305 2251 ntBASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 MIR662-201ENST00000384847 95 ntBASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 DUSP5P1-201ENST00000441325 1139 ntBASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 AL121672.3-201ENST00000608644 468 ntBASIC17.5■□□□□ 0.39
PTCHD3Q3KNS1 NPAP1P7-201ENST00000613027 823 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms