Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDH1Q08174 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PCDH1Q08174 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PCDH1Q08174 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH1Q08174 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 DDX43P3-201ENST00000441064 443 ntBASIC17.29■□□□□ 0.36
PCDH1Q08174 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.29■□□□□ 0.36
PCDH1Q08174 ZNF444P1-201ENST00000559497 298 ntBASIC17.29■□□□□ 0.36
PCDH1Q08174 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH1Q08174 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH1Q08174 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
PCDH1Q08174 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH1Q08174 AL353692.3-201ENST00000407031 1396 ntBASIC17.28■□□□□ 0.36
PCDH1Q08174 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PCDH1Q08174 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 AL359075.1-203ENST00000462729 1002 ntBASIC17.28■□□□□ 0.36
PCDH1Q08174 DUX4L26-201ENST00000489078 1255 ntBASIC17.28■□□□□ 0.36
PCDH1Q08174 AC022616.7-201ENST00000525383 220 ntBASIC17.28■□□□□ 0.36
PCDH1Q08174 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 AL390719.2-201ENST00000606993 987 ntBASIC17.28■□□□□ 0.36
PCDH1Q08174 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH1Q08174 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 LINC01311-201ENST00000565162 1445 ntBASIC17.28■□□□□ 0.36
PCDH1Q08174 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH1Q08174 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
PCDH1Q08174 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PCDH1Q08174 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PCDH1Q08174 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PCDH1Q08174 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH1Q08174 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH1Q08174 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH1Q08174 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH1Q08174 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH1Q08174 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH1Q08174 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PCDH1Q08174 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDH1Q08174 TSPY12P-201ENST00000421279 868 ntBASIC17.27■□□□□ 0.36
PCDH1Q08174 FAM210CP-201ENST00000445714 574 ntBASIC17.27■□□□□ 0.36
PCDH1Q08174 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDH1Q08174 KRT18P21-201ENST00000515767 1272 ntBASIC17.27■□□□□ 0.36
PCDH1Q08174 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDH1Q08174 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDH1Q08174 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH1Q08174 LINC01238-205ENST00000567549 1107 ntBASIC17.27■□□□□ 0.36
PCDH1Q08174 AC083849.1-201ENST00000615227 514 ntBASIC17.27■□□□□ 0.36
PCDH1Q08174 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
PCDH1Q08174 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH1Q08174 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.27■□□□□ 0.35
PCDH1Q08174 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH1Q08174 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH1Q08174 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH1Q08174 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH1Q08174 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH1Q08174 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
PCDH1Q08174 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH1Q08174 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms