Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HMGA1P17096 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 PRYP5-201ENST00000451909 266 ntBASIC18.51■□□□□ 0.55
HMGA1P17096 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGA1P17096 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.51■□□□□ 0.55
HMGA1P17096 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGA1P17096 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 AC073592.5-201ENST00000624854 528 ntBASIC18.51■□□□□ 0.55
HMGA1P17096 AL022326.1-202ENST00000641533 845 ntBASIC18.51■□□□□ 0.55
HMGA1P17096 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
HMGA1P17096 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGA1P17096 AC009949.1-201ENST00000623048 1830 ntBASIC18.51■□□□□ 0.55
HMGA1P17096 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 AIRN-201ENST00000601203 4374 ntBASIC18.51■□□□□ 0.55
HMGA1P17096 AC104581.1-202ENST00000635932 2618 ntBASIC18.51■□□□□ 0.55
HMGA1P17096 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGA1P17096 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGA1P17096 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HMGA1P17096 AC009113.1-201ENST00000570267 2443 ntBASIC18.5■□□□□ 0.55
HMGA1P17096 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HMGA1P17096 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.5■□□□□ 0.55
HMGA1P17096 AC145285.3-201ENST00000564603 959 ntBASIC18.5■□□□□ 0.55
HMGA1P17096 AC019129.2-201ENST00000609837 1235 ntBASIC18.5■□□□□ 0.55
HMGA1P17096 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
HMGA1P17096 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGA1P17096 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGA1P17096 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HMGA1P17096 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGA1P17096 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HMGA1P17096 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGA1P17096 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGA1P17096 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGA1P17096 AC132938.5-201ENST00000624980 1813 ntBASIC18.49■□□□□ 0.55
HMGA1P17096 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGA1P17096 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 AC098831.1-202ENST00000438821 336 ntBASIC18.49■□□□□ 0.55
HMGA1P17096 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 AC092910.1-201ENST00000482027 1129 ntBASIC18.49■□□□□ 0.55
HMGA1P17096 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.49■□□□□ 0.55
HMGA1P17096 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HMGA1P17096 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGA1P17096 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 AL020996.1-203ENST00000536896 2307 ntBASIC18.49■□□□□ 0.55
HMGA1P17096 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGA1P17096 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGA1P17096 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGA1P17096 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HMGA1P17096 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGA1P17096 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
HMGA1P17096 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 LAGE3P1-201ENST00000425356 484 ntBASIC18.48■□□□□ 0.55
HMGA1P17096 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGA1P17096 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGA1P17096 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGA1P17096 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms