Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.19■□□□□ 0.34
SEMA3DO95025 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SEMA3DO95025 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.18■□□□□ 0.34
SEMA3DO95025 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
SEMA3DO95025 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.18■□□□□ 0.34
SEMA3DO95025 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.18■□□□□ 0.34
SEMA3DO95025 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.18■□□□□ 0.34
SEMA3DO95025 AC104076.2-201ENST00000448912 469 ntBASIC17.18■□□□□ 0.34
SEMA3DO95025 AL359075.1-203ENST00000462729 1002 ntBASIC17.18■□□□□ 0.34
SEMA3DO95025 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.18■□□□□ 0.34
SEMA3DO95025 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.18■□□□□ 0.34
SEMA3DO95025 HYMAI.1-201ENST00000620949 238 ntBASIC17.18■□□□□ 0.34
SEMA3DO95025 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
SEMA3DO95025 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.18■□□□□ 0.34
SEMA3DO95025 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SEMA3DO95025 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SEMA3DO95025 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
SEMA3DO95025 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SEMA3DO95025 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.17■□□□□ 0.34
SEMA3DO95025 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SEMA3DO95025 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.17■□□□□ 0.34
SEMA3DO95025 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SEMA3DO95025 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.17■□□□□ 0.34
SEMA3DO95025 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.17■□□□□ 0.34
SEMA3DO95025 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.17■□□□□ 0.34
SEMA3DO95025 AC112907.2-201ENST00000448639 330 ntBASIC17.17■□□□□ 0.34
SEMA3DO95025 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
SEMA3DO95025 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.17■□□□□ 0.34
SEMA3DO95025 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SEMA3DO95025 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.17■□□□□ 0.34
SEMA3DO95025 LINC01238-205ENST00000567549 1107 ntBASIC17.17■□□□□ 0.34
SEMA3DO95025 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.17■□□□□ 0.34
SEMA3DO95025 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SEMA3DO95025 AC006116.8-202ENST00000587620 1550 ntBASIC17.17■□□□□ 0.34
SEMA3DO95025 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
SEMA3DO95025 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SEMA3DO95025 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SEMA3DO95025 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
SEMA3DO95025 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms