Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SHOX2O60902 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
SHOX2O60902 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
SHOX2O60902 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.93■□□□□ 0.46
SHOX2O60902 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SHOX2O60902 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
SHOX2O60902 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHOX2O60902 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
SHOX2O60902 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.92■□□□□ 0.46
SHOX2O60902 MIR149-201ENST00000384879 89 ntBASIC17.92■□□□□ 0.46
SHOX2O60902 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SHOX2O60902 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.92■□□□□ 0.46
SHOX2O60902 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.92■□□□□ 0.46
SHOX2O60902 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
SHOX2O60902 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.92■□□□□ 0.46
SHOX2O60902 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.92■□□□□ 0.46
SHOX2O60902 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHOX2O60902 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SHOX2O60902 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.91■□□□□ 0.46
SHOX2O60902 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SHOX2O60902 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.91■□□□□ 0.46
SHOX2O60902 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.91■□□□□ 0.46
SHOX2O60902 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.91■□□□□ 0.46
SHOX2O60902 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.91■□□□□ 0.46
SHOX2O60902 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SHOX2O60902 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SHOX2O60902 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHOX2O60902 AL365203.3-201ENST00000609742 2057 ntBASIC17.91■□□□□ 0.46
SHOX2O60902 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.9■□□□□ 0.46
SHOX2O60902 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms